To run MLGO, proceed with the following five steps.

Example 1: Run MLGO to obtain a phylogeny

Step 1: input the genome using the suggested format

Step 2: Click to indicate that we want a phylogeny

Step 3: No need to input a tree

Step 4: Provide a valid email

Step 5: Run!

Example 2: Run MLGO to obtain a phylogeny with bootstrapping values

Step 1: input the genome using the suggested format

Step 2: Click to indicate that we want a phylogeny, as well as bootstrapping

Step 3: No need to input a tree

Step 4: Provide a valid email

Step 5: Run!

Example 3: Run MLGO to obtain ancestral genomes (BPP) without knowing the true tree

Step 1: input the genome using the suggested format

Step 2: Click to indicate that we want a BPP

Step 3: No need to input a tree

Step 4: Provide a valid email

Step 5: Run!

Example 4: Run MLGO to obtain ancestral genomes (SPP) with an input tree

Step 1: input the genome using the suggested format

Step 2: Click to indicate that we want SPP

Step 3: Input a tree

Step 4: Provide a valid email

Step 5: Run!